upgrade to 7.0 failed caused by nokogiri
Hi, I took a few hours to upgrade my gitlab from 6.9 to 7.0 but failed. When executing the following command, always got error:
root@gitlab:/home/git/gitlab# sudo -u git -H bundle install --without development test postgres --deployment
Bundler::GemspecError: Could not read gem at /home/git/gitlab/vendor/bundle/ruby/2.1.0/cache/nokogiri-1.6.2.1.gem. It may be corrupted.
An error occurred while installing nokogiri (1.6.2.1), and Bundler cannot continue.
Make sure that `gem install nokogiri -v '1.6.2.1'` succeeds before bundling.
Then I executed above command gem install ...
root@gitlab:/home/git/gitlab# gem install nokogiri -v '1.6.2.1'
Building native extensions. This could take a while...
Building nokogiri using packaged libraries.
Building libxml2-2.8.0 for nokogiri with the following patches applied:
- 0001-Fix-parser-local-buffers-size-problems.patch
- 0002-Fix-entities-local-buffers-size-problems.patch
- 0003-Fix-an-error-in-previous-commit.patch
- 0004-Fix-potential-out-of-bound-access.patch
- 0005-Detect-excessive-entities-expansion-upon-replacement.patch
- 0006-Do-not-fetch-external-parsed-entities.patch
- 0007-Enforce-XML_PARSER_EOF-state-handling-through-the-pa.patch
- 0008-Improve-handling-of-xmlStopParser.patch
- 0009-Fix-a-couple-of-return-without-value.patch
- 0010-Keep-non-significant-blanks-node-in-HTML-parser.patch
- 0011-Do-not-fetch-external-parameter-entities.patch
************************************************************************
IMPORTANT! Nokogiri builds and uses a packaged version of libxml2.
If this is a concern for you and you want to use the system library
instead, abort this installation process and reinstall nokogiri as
follows:
gem install nokogiri -- --use-system-libraries
If you are using Bundler, tell it to use the option:
bundle config build.nokogiri --use-system-libraries
bundle install
However, note that nokogiri does not necessarily support all versions
of libxml2.
For example, libxml2-2.9.0 and higher are currently known to be broken
and thus unsupported by nokogiri, due to compatibility problems and
XPath optimization bugs.
************************************************************************
Building libxslt-1.1.28 for nokogiri with the following patches applied:
- 0001-Adding-doc-update-related-to-1.1.28.patch
- 0002-Fix-a-couple-of-places-where-f-printf-parameters-wer.patch
- 0003-Initialize-pseudo-random-number-generator-with-curre.patch
- 0004-EXSLT-function-str-replace-is-broken-as-is.patch
- 0006-Fix-str-padding-to-work-with-UTF-8-strings.patch
- 0007-Separate-function-for-predicate-matching-in-patterns.patch
- 0008-Fix-direct-pattern-matching.patch
- 0009-Fix-certain-patterns-with-predicates.patch
- 0010-Fix-handling-of-UTF-8-strings-in-EXSLT-crypto-module.patch
- 0013-Memory-leak-in-xsltCompileIdKeyPattern-error-path.patch
- 0014-Fix-for-bug-436589.patch
- 0015-Fix-mkdir-for-mingw.patch
************************************************************************
IMPORTANT! Nokogiri builds and uses a packaged version of libxslt.
If this is a concern for you and you want to use the system library
instead, abort this installation process and reinstall nokogiri as
follows:
gem install nokogiri -- --use-system-libraries
If you are using Bundler, tell it to use the option:
bundle config build.nokogiri --use-system-libraries
bundle install
************************************************************************
Successfully installed nokogiri-1.6.2.1
Parsing documentation for nokogiri-1.6.2.1
Done installing documentation for nokogiri after 3 seconds
1 gem installed
But the error still exists. I know nothing about ruby, so do not know how to fix this problem.
Bundler::GemspecError: Could not read gem at /home/git/gitlab/vendor/bundle/ruby/2.1.0/cache/nokogiri-1.6.2.1.gem. It may be corrupted.
An error occurred while installing nokogiri (1.6.2.1), and Bundler cannot continue.
Make sure that `gem install nokogiri -v '1.6.2.1'` succeeds before bundling.
My environment:
root@gitlab:~# lsb_release -a
No LSB modules are available.
Distributor ID: Ubuntu
Description: Ubuntu 12.04.4 LTS
Release: 12.04
Codename: precise
root@gitlab:~# ruby -v
ruby 2.1.2p95 (2014-05-08 revision 45877) [x86_64-linux]
root@gitlab:~# gem -v
2.3.0