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update init.d script

username-removed-15305 requested to merge (removed):init.d into master

update the comment for the defaults file

The 4 variables would depend on the app_root, which will be defined in the defaults file, so it makes sense to add these after sourcing /etc/default/gitlab

EDIT: updated the example defaults file with the rest of the variable Left alone the source of /etc/default/gitlab

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