Since the migration might be queued already and be rescheduled when it
fails on a uniqueness error, this should help clearing the background
migration queue faster.

Closes gitaly#985

The refs hash is used to determine what branches and tags have a commit
as head in the network graph. The previous implementation depended on
Rugged#references. The problem with this implementation was that it
depended on rugged, but also that it iterated over all references and
thus loading more data than needed if for example the project uses CI/CD
environments, Pipelines, or Merge Requests.

Given only refs are checked the network cares about the GraphHelper#refs
method has no need to reject those, simplifying the method.

Closes gitlab-org/gitaly#880

- Move the exception handling as close to the source as possible to
avoid leaking Psych ahstraction
- Also remove unnecessary rescue all statement from LintsController.
This should not be necessary anymore since any YAML errors should all be
caught by the #validation_message method.

Signed-off-by: Bastian Blank <waldi@debian.org>

Uses Lfs::FileModificationHandler to coordinate LFS detection, creation of LfsObject, etc

Caveats:
 1. This isn't used by the multi-file editor / Web IDE
 2. This isn't used on rename. We'd need to be able to download LFS files
    and add them to the commit if they no longer match so not as simple.
 3. We only check the root .gitattributes file, so this should be improved
    to correctly check for nested .gitattributes files in subfolders.

Signed-off-by: Dmitriy Zaporozhets <dmitriy.zaporozhets@gmail.com>