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QMMM and TIPnP docs/tutorials

username-removed-559845 requested to merge asod/ase:qmmm_tipnp_docs_tuts into master

Better late than never, documentation on the QM/MM calculator(s). Also, due to this, tried to add a water box equilibration-tutorial as well. But @jensj am I correct in gathering you've removed the set_tip3p_charges(), and they're now set automatically?

Actual tutorial content could still need expansion, not sure which test problems are small enough so they make sense though. It's a start though :)

Still need to make a tutorial for the SimpleQMMM calculator as well.

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