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Ensure apps are not kept in "Updates" when their repo is disabled.

This caused problems when users then tried to action the pending install, where it would no longer have enough information to install the app. Although it may be technically possible to keep enough information around in memory to make the app installable, but it is not worth the effort. If a user intentionally disables a repo, we should no longer be responsible for keeping information about its apps around.

Fixes #995 (closed).

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