Encode Gitaly diff patches properly

Conversation: gitaly#222

What does this MR do?

It encodes Gitaly diff patches the same way we do for the Rugged ones, to fix this issue https://gitlab.com/gitlab-org/gitaly/issues/209#note_33166206.

Are there points in the code the reviewer needs to double check?

Why was this MR needed?

Screenshots (if relevant)

Does this MR meet the acceptance criteria?

• Changelog entry added, if necessary
• Documentation created/updated
• API support added
• Tests
  • Added for this feature/bug
  • All builds are passing
• Conform by the merge request performance guides
• Conform by the style guides
• Branch has no merge conflicts with master (if it does - rebase it please)
• Squashed related commits together

What are the relevant issue numbers?